So I may have found another issue. After activating the konami code I tried to skip a map encounter and the game soft locked like in the picture. If I reset I can move again though. Also as others have stated I have had enemies not dropping loot when they should have. It seems to happen when an enemy suicides on when of my characters though I can't be sure about that being related or a part of the issue.
Fire Emblem - The Sacred Stones Super Randomizer.bmp